PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna11428.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HRT-like
Protein Properties Length: 154aa    MW: 17389.9 Da    PI: 9.9835
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna11428.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like38.22.4e-1239571331
                 HRT-like 13 krqPvkgRKRCeeHKGmRi 31
                              ++Pv+gRKRC+eHKGmRi
  mrna11428.1-v1.0-hybrid 39 ATPPVQGRKRCAEHKGMRI 57
                             689***************7 PP

2HRT-like52.48.6e-17108136331
                 HRT-like   3 GviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                              G+il dGs C+++P++gRKRC eHKG+Ri
  mrna11428.1-v1.0-hybrid 108 GFILPDGSRCRTEPIQGRKRCDEHKGRRI 136
                              99**************************7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MVQGTLMMSF RDSRKFPQNL RDLLILSRGF YLSDRSKLAT PPVQGRKRCA EHKGMRIKAS  60
ITVRISDNNV DSKCSVLSNK ELDSHDASNV KFETVEFHVS ESSTLIFGFI LPDGSRCRTE  120
PIQGRKRCDE HKGRRIQKSN SKSVKEEEVD ICA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008344016.11e-29PREDICTED: uncharacterized protein LOC103406805
TrEMBLW9R5X16e-24W9R5X1_9R
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3397922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.13e-14effector of transcription2